NaCTeM CTD Web Services

نویسندگان

  • Riza Batista-Navarro
  • Rafal Rak
چکیده

Participating in the BioCreative IV CTD Curation shared task, we developed RESTful, BioCcompliant web services which recognise CTD chemicals, genes, diseases and actions terms in PubMed abstracts. The tools are based on machine learning approaches, specifically, conditional random fields (CRFs) for recognising names of chemicals, genes and diseases, and support vector machines (SVMs) for recognising action terms.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Web services-based text-mining demonstrates broad impacts for interoperability and process simplification

The Critical Assessment of Information Extraction systems in Biology (BioCreAtIvE) challenge evaluation tasks collectively represent a community-wide effort to evaluate a variety of text-mining and information extraction systems applied to the biological domain. The BioCreative IV Workshop included five independent subject areas, including Track 3, which focused on named-entity recognition (NER...

متن کامل

Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database

We report on the original integration of an automatic text categorization pipeline, so-called ToxiCat (Toxicogenomic Categorizer), that we developed to perform biomedical documents classification and prioritization in order to speed up the curation of the Comparative Toxicogenomics Database (CTD). The task can be basically described as a binary classification task, where a scoring function is u...

متن کامل

Adapting the OCMiner text processing system to the CTD controlled vocabulary

We adapted OCMiner, a modular text processing pipeline especially suited for high-speed processing of large document collections, to a specific controlled vocabulary as given by the Comparative Toxicogenomic Database (CTD). We provide a RESTful web service which processes documents given in the BioCreative XML format and annotates them with domainspecific terms from the CTD domains genes, chemi...

متن کامل

NaCTeM EventMine for BioNLP 2013 CG and PC tasks

This paper describes NaCTeM entries for the Cancer Genetics (CG) and Pathway Curation (PC) tasks in the BioNLP Shared Task 2013. We have applied a state-ofthe-art event extraction system EventMine to the tasks in two different settings: a single-corpus setting for the CG task and a stacking setting for the PC task. EventMine was applicable to the two tasks with simple task specific configuratio...

متن کامل

QoS-Based web service composition based on genetic algorithm

Quality of service (QoS) is an important issue in the design and management of web service composition. QoS in web services consists of various non-functional factors, such as execution cost, execution time, availability, successful execution rate, and security. In recent years, the number of available web services has proliferated, and then offered the same services increasingly. The same web ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2013